PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00681.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 237aa    MW: 26106.8 Da    PI: 5.4955
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00681.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-184090155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  Rsa1.0_00681.1_g00001.1 40 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 90
                             59*****998.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.61E-174099No hitNo description
Gene3DG3DSA:3.30.730.103.4E-304199IPR001471AP2/ERF domain
PROSITE profilePS5103221.6414198IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-194199IPR016177DNA-binding domain
PfamPF008471.6E-114190IPR001471AP2/ERF domain
SMARTSM003803.2E-3441104IPR001471AP2/ERF domain
PRINTSPR003675.6E-94253IPR001471AP2/ERF domain
PRINTSPR003675.6E-96480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MVKQERKIQV TTSSSSLSQS SSSTSSSLAL HHQSCKDKIK KYKGVRMRSW GSWVSEIRAP  60
NQKTRIWLGS YSTAEAAARA YDAALLCLKG PKANFNFPHI NTTSQFLIDI DEKTPLSPKS  120
IQKIAAQAAS SISSDAFTPL SSSNDDDHDD GIQNHTSPSS SSAASSPPGD HHNDDDLVSL  180
MASFVDEHVT LMDPSWYDHN EMFFINGAFD YSPQLISSKT TMDDLYDDAD IQLWSFS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00246DAPTransfer from AT1G77640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893700.0AC189370.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB047M06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013720187.11e-117PREDICTED: ethylene-responsive transcription factor ERF013-like
SwissprotQ9CAP42e-86ERF13_ARATH; Ethylene-responsive transcription factor ERF013
TrEMBLA0A078DGH21e-125A0A078DGH2_BRANA; BnaA07g33640D protein
STRINGBra015660.1-P1e-115(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77640.13e-68ERF family protein